Category Archives: Presentations

Automating Mathematical Program Transformations

Posted on January 18, 2010 by ashish

Abstract Mathematical programs (MPs) are a class of constrained optimization problems that include linear, mixed-integer, and disjunctive programs. Strategies for solving MPs rely heavily on various transformations between these subclasses, but most are not automated because MP theory does not … Continue reading →

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ENCODE/modENCODE Consortium Meeting 2009

Posted on March 27, 2009 by ashish

Ashish Agarwal, LaDeana W. Hillier, Joel Rozowsky, David Koppstein, Andrea Sboner, Lukas Habegger, Jeanyoung Jo, Michael Snyder, Philip Green, Valerie Reinke, Robert H. Waterston, Mark Gerstein, “Transcriptome comparison between tiling arrays and next generation sequencing on matched worm samples, towards … Continue reading →

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Dissertation: Logical Modeling Frameworks for the Optimization of Discrete-Continuous Systems

Posted on May 20, 2006 by ashish

Abstract Often, it is very difficult to pose a model for a system even after the system is conceptually understood. The reason is the mathematical languages we employ have few forms of expression. We define more expressive languages, first for … Continue reading →

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