A Domain Specific Language Stack for Bio HPC

We have given several presentations on our DSL approach to the management and analysis of big-data in the field of Biology. Now, with Karl Ward, we have been extending this approach to the systems layer, enabling more robust management and configuration of the hardware and software infrastructure so critical to bioinformatics. Many thanks to Efstratios (Stratos) Efstathiadis for giving us an opportunity to present this work at the first Bio HPC Workshop at NYU’s Langone Medical Center.

Karl Ward, Sebastien Mondet, Ashish Agarwal. A Domain Specific Language Stack for Bio HPC, First Workshop on High Performance Computing for Biomedical Research, Center for Health Informatics and Bioinformatics, New York University Langone Medical Center, May 2012.

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